Researchers
Title: Dr
First name: Martin
Surname: Stoermer
Web Site: http://www.uq.edu.au/uqresearchers/researcher/stoermermj.html
E-mail: m.stoermer@imb.uq.edu.au
Background:
After graduating from Sydney University I came to Queensland working in the group at the Centre for Drug Design and Development, as it was known then. I then went and did an overseas postdoc in Germany and then returned to Australia by taking a job at the Victorian College of Pharmacy, Monash University. In 2000 I returned to Queensland, to the newly formed Institute for Molecular Bioscience. Why did I return? Two words: Research and Facilities.
Firstly the research environment here is the right mixture of chemistry and biology. Our group consists of about half biologists and half chemists, interacting daily and directly in adjacent labs and a single office space. We don't restrict ourselves to peptide chemistry either. Whether it's full-on organic synthesis, med, chem. peptide chemistry, or peptidomimetics, we're doing it. Our molecular modelling research has access to stacks of modern modelling software on 4 platforms (Mac, Windows, Linux, SGI). Our chemical databases, both home grown and public domain run to ~50 ~140 million compounds for all our virtual screening programs.
If you take a walk over to the Labs page on this web site you'll see our level 7 NMR lab. Two 600's with inverse probes (one 1H-13C, one 1H-X) to do pretty much everything you want to do NMR wise on small-medium sized molecules, and one of them can be used in LC mode as well. These are booked a week in advance, and the 400 MHz Varian instrument is a walk-up. And our division also has another 3 NMR's (500, 600, 900MHz) on level 2 which serve the chemists on level 2. Coupled with a great chemical store, walk-up Mass Spec, LCMS I can't think of anywhere better to do biologically-focussed chemistry research in Australia.
Research Interests:
Synthesis of inhibitors of the NS3 serine proteases from Dengue and West Nile Flaviviruses
The application of NMR spectroscopy to the elucidation of solution structure/conformation of small peptides and peptido-organic hybrids
Virtual screening, principally applied to protease, GPCR, and kinase targets
Molecular modeling
Inhibitors of human non-secretory phospholipase A2
The synthesis of small rigid hydrophobic cavitands as enzyme mimetics
The synthesis of inhibitors of HIV-1 proteinase as potential therapeutics for the treatment of AIDS
The synthesis of small non-steroidal antiinflammatory drugs as arthritis therapeutics
New methods of heterocyclic synthesis
The study of reactive organometallic intermediates by heteronuclear nmr spectroscopy
The syntheses of non-toxic derivatives and analogues of epibatidine
Development of novel anti-schizophrenic drugs
Publications:
- "Stereoelectronic effects on dienophile separation influence the Diels-Alder synthesis of molecular clefts" Stoermer M.J.; Wickramasinghe W.A.; Byriel K.A.; Hockless D.C.R.; Skelton B.W.; Sobolev A.N.; White A,H.; Mak J.Y.W.; Fairlie D.P. Eur. J. Org. Chem., 2017, Fulltext via Wiley: 10.1002/ejoc.201701319.
- "Orally Absorbed Cyclic Peptides" Nielsen, D. S.; Shepherd, N. E.; Xu, W.; Lucke, A. J.; Stoermer, M. J.; Fairlie, D. P. . Chemical Reviews 2017. in press. Full text via ACS Publications
- "Simultaneous uncoupled expression and purification of the Dengue virus NS3 protease and NS2B co-factor domain" Shannon, A. E.; Chappell, K. J.; Stoermer, M. J.; Chow, S. Y.; Kok, W. M.; Fairlie, D. P.; Young, P. R. . Protein Expr Purif 2016, 119, 124-9. Pubmed. Full text via ScienceDirect.
- "Receptor residence time trumps drug-likeness and oral bioavailability in determining efficacy of complement C5a antagonists." Seow, V.; Lim, J.; Cotterell, A. J.; Yau, M. K.; Xu, W.; Lohman, R. J.; Kok, W. M.; Stoermer, M. J.; Sweet, M. J.; Reid, R. C.; Suen, J. Y.; Fairlie, D. P. Sci Rep 2016, 6, 24575. Pubmed. Full text via PubMed Central.
- "Three Homology Models of PAR2 Derived from Different Templates: Application to Antagonist Discovery." Perry, S. R.; Xu, W.; Wirija, A.; Lim, J.; Yau, M. K.; Stoermer, M. J.; Lucke, A. J.; Fairlie, D. P. J Chem Inf Model 2015, 55, 1181-91. Pubmed, Full text via ACS Publications.
- "Virtual Screening of Peptide and Peptidomimetic Fragments Targeted to Inhibit Bacterial Dithiol Oxidase DsbA." Duprez, W.; Bachu, P.; Stoermer, M. J.; Tay, S.; McMahon, R. M.; Fairlie, D. P.; Martin, J. L. PLoS One 2015, 10, e0133805. PubMed. Full text via Plos.org.
- "Potent heterocyclic ligands for human complement c3a receptor" Reid, R. C.; Yau, M. K.; Singh, R.; Hamidon, J. K.; Lim, J.; Stoermer, M. J.; Fairlie, D. P. . J Med Chem 2014, 57, 8459-70. PubMed. Full text via ACS Publications.
- "Cyclic Penta- and Hexaleucine Peptides without N-Methylation Are Orally Absorbed." Hill, T. A.; Lohman, R. J.; Hoang, H. N.; Nielsen, D. S.; Scully, C. C.; Kok, W. M.; Liu, L.; Lucke, A. J.; Stoermer, M. J.; Schroeder, C. I.; Chaousis, S.; Colless, B.; Bernhardt, P. V.; Edmonds, D. J.; Griffith, D. A.; Rotter, C. J.; Ruggeri, R. B.; Price, D. A.; Liras, S.; Craik, D. J.; Fairlie, D. P. ACS Med Chem Lett 2014, 5, 1148-51. PubMed. Full text via ACS Publications. Full text via PubMed Central.
- "An interaction between the methyltransferase and RNA dependent RNA polymerase domains of the West Nile virus NS5 protein" Tan CS, Hobson-Peters JM, Stoermer MA, Fairlie DP, Khromkyh AA, Hall RA, J. Gen.Vir. 2013, i94, 1961-71. Abstract via Pubmed. Full Text via SGMJournals.
- "Lithium perchlorate accelerated Friedel–Crafts addition of furans to β-nitrostyrenes" Stoermer, M. J.; Richter, H.-M.; Kaufmann, D. E. . Tetrahedron Letters 2013, 54, 6776-6778. Full text via ScienceDirect.
- "Identification and characterization of bi-thiazole-2,2'-diamines as kinase inhibitory scaffolds" Kevin R Ngoei; Dominic C Ng; Paul R Gooley; David P Fairlie; Martin J Stoermer; Marie A. Bogoyevitch, Biochim. Biophys. Acta, Proteins Proteomics, 2013, 1834, 1077-88. Abstract via Pubmed, Full Text via ScienceDirect.
- "Structures of peptide agonists for human protease activated receptor 2" Martin J. Stoermer, Bernadine Flanagan, Renée L. Beyer, Praveen K. Madala, David P. Fairlie, Biorg. Med. Chem. Lett., 2012, 22, 916-919. Full text via ScienceDirect.
- "In silico screening of small molecule libraries using the dengue virus envelope E protein has identified compounds with antiviral activity against multiple flaviviruses" Thorsten Kampmann, Ragothaman Yennamalli, Phillipa Campbell, Martin J. Stoermer, David P. Fairlie, Bostjan Kobe, Paul R. Young, Antiviral Research, 2009, 84, 234–241. Full text via ScienceDirect.
- "Base-sensitivity of Arginine Alpha-Ketoamide Inhibitors of Serine Proteases." Martin J. Stoermer, Donmienne Leung, Paul R. Young, David P. Fairlie, Aust. J. Chem, 2009, 62(9), 988-992. Full text via CSIRO publishing.
- "Structure of West Nile Virus NS3 Protease: Ligand Stabilization of Catalytic Conformation." Gautier Robin, Keith Chappell, Martin J. Stoermer, Shu-Hong Hu, Paul R. Young, David P. Fairlie, Jennifer L Martin J. Mol. Biol. 2009, 385(5), 1568-1577. Full text via ScienceDirect.
- "West Nile Virus NS2B/NS3 Protease as an Antiviral Target." Keith J. Chappell, Martin J. Stoermer, David P. Fairlie, and Paul R. Young Curr. Med. Chem. , 2008, 15(27), 2771-2784. Full text via IngentaConnect.
- "Potent Cationic Inhibitors of West Nile Virus NS2B/NS3 Protease With Serum Stability, Cell Permeability and Antiviral Activity." Martin J. Stoermer, Keith J. Chappell, Susann Liebscher, Christina M. Jensen, Chun H. Gan, Praveer K. Gupta, Wei-Jun Xu, Paul R. Young, and David P. Fairlie, J. Med. Chem. 2008, 51(18), 5714-5721. Full text via ACS publications
- " Synthesis and Cannabinoid Activity of a Variety of 2,3-Substituted 1-Benzo[b]thiophene Derivatives and 2,3-Substituted Benzofurans: Novel Agonists for the CB1 Receptor. " Gerard P. Moloney, James A. Angus, Alan D. Robertson, Martin J. Stoermer, Michael Robinson, Lucy Lay, Christine E. Wright, Ken McRae and Arthur Christopoulos, Aust. J. Chem. 2008, 61(7), 484-499. Full Text via CSIRO Publishing.
- "Synthesis and Cannabinoid Activity of 1-substituted-Indole-3-oxadiazole derivatives: Novel Agonists for the CB1 Receptor." Gerard P. Moloney, James A. Angus, Alan D. Robertson, Martin J. Stoermer, Michael Robinson, Christine E. Wright, Ken McRae and Arthur Christopolous; Eur. J. Med. Chem., 2008, 43 (3), 513-539. Full Text via Sciencedirect
- "Mutagenesis of the West Nile virus NS2B cofactor domain reveals two regions essential for protease activity" Keith J. Chappell, Martin J. Stoermer, David P. Fairlie, and Paul R. Young J. Gen. Virol. , 2008, 89 (4), 1010-1014. Full Text via SGM Journals
- "Generation and characterization of proteolytically active and highly stable truncated and full-length recombinant west nile virus NS3." Keith J. Chappell, Martin J. Stoermer, David P. Fairlie, and Paul R. Young Protein Expr. Purif. , 2007, 3(1), 87-96. Full Text via Sciencedirect
- "Insights to Substrate Binding and Processing by West Nile Virus NS3 Protease through Combined Modeling, Protease Mutagenesis, and Kinetic Studies." Keith J. Chappell, Martin J. Stoermer, David P. Fairlie, and Paul R. Young J. Biol. Chem., 2006, 281(50), 38448-38458. Full Text via www.jbc.org
- "Potencies of Human Immunodeficiency Virus Protease Inhibitors In Vitro against Plasmodium falciparum and In Vivo against Murine Malaria" Katherine T. Andrews, David P. Fairlie, Praveen K. Madala, John Ray, David M. Wyatt, Petrina M. Hilton, Lewis A. Melville, Lynette Beattie, Donald L. Gardiner, Robert C. Reid, Martin J. Stoermer, Tina Skinner-Adams, Colin Berry, and James S. McCarthy, Antimicrobial Agents And Chemotherapy, 2006, 50(2) 639-648. Full Text via aac.asm.org
- "Current Status of Virtual Screening as Analysed by Target Class." Martin J. Stoermer Medicinal Chemistry, 2006, 2(1), 89-112. Abstract via Bentham Science
- "Structural Mimicry of Two Cytochrome b562 Interhelical Loops Using Macrocycles Constrained By Oxazoles and Thiazoles." Yogendra Singh, Martin J. Stoermer, Andrew J. Lucke, Tom Guthrie, David P. Fairlie. J. Am. Chem. Soc., 2005, 127(18), 6563-6572. Full Text via pubs.acs.org
- "West Nile virus NS3 protease: Site-directed mutagenesis and kinetic studies that identify key enzyme-substrate interactions " Keith J. Chappell, Tessa A. Nall, Martin J. Stoermer, Ning-Xia Fang, Joel D. A. Tyndall, David P. Fairlie, and Paul R. Young J. Biol. Chem., 2005, 280(4), 2896-2903. Full Text via www.jbc.org
- "Enzymatic characterisation and homology model of a catalytically active recombinant West Nile virus NS3 protease" T. A. Nall, K. J. Chappell, M. J. Stoermer, N. X. Fang, J. D. Tyndall, P. R. Young, and D. P. Fairlie, J. Biol. Chem., 2004, 279(47), 48535-48542. Full Text via www.jbc.org
- "Potent Cyclic Antagonists Of The Complement C5a Receptor On Human Polymorphonuclear Leukocytes. Relationships Between Structures and Activity" Darren R. March, Lavinia M. Proctor, Martin J. Stoermer, Robert Sbaglia, Giovanni Abbenante, Robert C. Reid, Trent M. Woodruff, Khemar Wadi, Natalii Paczkowski, Joel D. A. Tyndall, Stephen M. Taylor, and David P. Fairlie. Mol. Pharmacology, 2004, 65, 868-879. Full Text via Aspetjournals
- "Cycloadditions of Isobenzofuran to a Constrained Template Bearing Neighboring Dienophiles" Martin, J. Stoermer, Douglas N. Butler, Ronald N.Warrener, K. D. V. Weerasuria, and David P. Fairlie. Chem. Eur. J., 2003, 9(9), 2068-2071. Full text via Wiley Interscience.
- "Regioselective Assembly of Antiparallel Loops on a Macrocyclic Scaffold Constrained by Oxazoles and Thiazoles" Yogendra Singh, Martin J. Stoermer, Andrew J. Lucke, Matthew P. Glenn and David P. Fairlie, Org. Lett., 2002, 4(20), 3367 - 3370. Full text via ACS publications
- "Compounds and Inhibitors Of Phospholipases", Reid, Robert C.; Clark, Christopher I.; Hansford, Karl; Stoermer, Martin J.; McGeary, Ross P.; Fairlie, David P. PCT Int. Appl. (2002), WO 0208189.
- "Activity of recombinant dengue 2 virus NS3 protease in the presence of a truncated NS2B cofactor, small peptide substrates, and inhibitors". Donmienne Leung, Kate Schroder, Helen White, Ning-Xia Fang, Martin J. Stoermer, Giovanni Abbenante, Paul R. Young, and David P. Fairlie, J. Biol. Chem., 2001, 276(49), 45762-45771. Full Text via www.jbc.org
- Australian Patent PR1180/00 "Therapeutic Molecules and Methods" Moloney, G. P., Robertson, A. D., Angus, J. A., Stoermer, M. J., Robinson, M., Lay, L., Wright, C., McRae, K., Christopolous, A., Coles. P. and Garavelas, A. 2000.
- Australian Patent PQ8965/00 "Amino Acid Derivatives", Clark, C., Hansford, K., Reid, R.C.,Stoermer, M.J., Fairlie, D.P., 2000
- "Chemistry in the Ambient Field of the Alkaloid Epibatidine, 1. 2-(Het)aryl-Substituted 7-Azabicyclo[2.2.1]heptane Systems", Albert Otten, Jan Christoph Namyslo, Martin Stoermer, Dieter E. Kaufmann. Eur. J. Org. Chem. 1998, 1997-2001. Full text via Wiley Interscience
- "Structure-Activity Relationships for Macrocyclic Peptido-Mimetic Inhibitors of HIV-1 Protease." Abbenante, G., Bergman, D.A., Brinkworth, R.I., March, D.A., Reid, R.C., Hunt, P., James, I.W., Dancer, R.J., Garnham, B., Stoermer M.J., and Fairlie, D.P. Biorg. Med. Chem. Letters., 1996, 6, 2531. Full text via ScienceDirect
- "1H n.m.r. Evidence for the Formation of Vinyllead Triacetates. The Reactions of Vinylmercury, Vinyltin, and Vinylboronic acids with Lead Tetraacetate". C.J. Parkinson and Martin J. Stoermer, J. Organomet. Chem, 1996, 507, 207. Full text via ScienceDirect
- "A Selective Route to Substituted Chromones. Addition of Phenols to Dimethyl Acetylenedicarboxylate." M.J. Stoermer and D.P. Fairlie, Aust. J. Chem., 1995, 48(3), 677. Full Text via CSIRO Publishing
- "Flavones are inhibitors of HIV-1 Proteinase", R.I. Brinkworth, M.J. Stoermer, D.P. Fairlie, Biochem. Biophys. Res. Communications, 1992, 188(2), 631. Full Text via ScienceDirect
- "Electrophilic Vinylations by Vinyllead Triacetates and Tribenzoates Generated by Tin-Lead Exchange" Parkinson, C.J., Pinhey, J.T., and Stoermer, M.J., J. Chem. Soc. Perkin Trans. 1, 1992, 15, 1911. Full Text via RSC archive
- "Vinyl Cation Formation by Decomposition of Vinyllead(IV) Triacetates. Part 2". Pinhey, J.T., and Stoermer, M.J., J. Chem. Soc. Perkin Trans. 1, 1991, 10, 2455. Full Text via RSC archive
- Vinyl Cation Formation by Decomposition of Vinyl-lead Triacetates. The reactions of Vinylmercury and Vinyltin Compounds with Lead Tetraacetate." Moloney, M.G., Pinhey, J.T., and Stoermer, M.J., J. Chem. Soc. Perkin Trans. 1, 1990, 10, 2645. Full Text via RSC archive
- D J Chalmers, I T Crosby, A Garavelas, M Kiefel, and M J Stoermer. "Extracts", Chemistry in Australia, January/February 1998, p37.
- D J Chalmers, I T Crosby, A Garavelas, M Kiefel, and M J Stoermer. "Extracts", Chemistry in Australia, August 1998, p24.
- "Ethyl (E)-3-methyl-5-phenyl-2-pentenoate", Martin J. Stoermer and John T. Pinhey, Molecules 1998, 3, M51.
- "Ethyl (Z)-3-methyl-5-phenyl-2-pentenoate", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M52.
- "(E)-3-Methyl-5-phenyl-2-pentenoic acid", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M53.
- "(Z)-3-Methyl-5-phenyl-2-pentenoic acid", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M54.
- "2(S,R),3(R,S)-2,3-Dibromo-3-methyl-5-phenyl-2-pentanoic acid", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M55.
- "2(R,S),3(S,R)-2,3-Dibromo-3-methyl-5-phenyl-2-pentanoic acid", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M56.
- "(Z)-1-Bromo-2-methyl-4-phenyl-1-butene", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M57.
- "(E)-1-Bromo-2-methyl-4-phenyl-1-butene", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M58.
- "Ethyl 3-hydroxy-3-methyl-5-phenylpentanoate", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M59.
- "Ethyl 3-acetoxy-3-methyl-5-phenylpentanoate", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M60.
- "3-Hydroxy-3-methyl-5-phenylpentanoic acid", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M61.
- "Ethyl (E)-2-methyl-5-phenyl-2-pentenoate", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M62.
- "Ethyl (Z)-2-methyl-5-phenyl-2-pentenoate", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M63.
- "(E)-2-Methyl-5-phenyl-2-pentenoic acid", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M64.
- "2,3-Dibromo-2-methyl-5-phenylpentanoic acid", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M65.
- "(Z)-2-Bromo-5-phenyl-2-pentene", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M66.
- "Tributyl-[(Z)-5-phenyl-2-penten-2-yl]stannane", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M67.
- "[(Z)-5-Phenyl-2-penten-2-yl]mercury bromide", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M68.
- "[(Z)-5-Phenyl-2-penten-2-yl]mercury acetate", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M69.
- "bis-[(Z)-5-Phenyl-2-penten-2-yl]mercury", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M70.
- "Ethyl (E)-3-(2-methoxyphenyl)-2-butenoate", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M71.
- "Ethyl (Z)-3-(2-methoxyphenyl)-2-butenoate", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M72.
- "(E)-3-(2-Methoxyphenyl)-2-butenoic acid", Martin J. Stoermer and John T. Pinhey, Molecules, 1998, 3, M73.

Martin doing molecular modelling. Note coffee mug - vital for
successful modelling